nanome.api.structure.atom module¶
-
class
Atom
[source]¶ Bases:
nanome._internal.structure.models._Atom
,nanome.api.structure._deprecated.AtomDeprecated
,nanome.api.structure.base.Base
Represents an Atom-
class
AtomRenderingMode
¶ Bases:
enum.IntEnum
Shape types an atom can be rendered as.To be used with atom.atom_mode-
Adaptive
= 6¶
-
BFactor
= 5¶
-
BallStick
= 0¶
-
Point
= 4¶
-
Stick
= 1¶
-
VanDerWaals
= 3¶
-
Wire
= 2¶
-
-
acceptor
¶
-
atom_color
¶ - Color of the atom
Type: Color
-
atom_mode
¶ - Represents how the atom should be shown, such as ball and point or wired.
Type: AtomRenderingMode
-
bfactor
¶
-
bonds
¶ - Bonds that the atom is part of
-
chain
¶ - Chain that the atom is part of
-
complex
¶ - Complex that the atom is part of
-
conformer_count
¶
-
current_conformer
¶
-
donor
¶
-
formal_charge
¶
-
het_surfaced
¶
-
in_conformer
¶
-
molecule
¶ - Molecule that the atom is part of
-
occupancy
¶
-
partial_charge
¶
-
polar_hydrogen
¶
-
position
¶ - Position of the atom
Type: Vector3
-
positions
¶
-
residue
¶ - Residue that the atom is part of
-
serial
¶
-
surface_color
¶ - Color of the atom surface
Type: Color
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class