Nanome-Plugin-API
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Nanome-Plugin-API
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
a (Color attribute)
acceptor (Atom attribute)
account_email (PresenterInfo attribute)
account_id (PresenterInfo attribute)
account_name (PresenterInfo attribute)
active (Button.ButtonIcon attribute)
(Button.ButtonMesh attribute)
(Button.ButtonOutline attribute)
(Button.ButtonSwitch attribute)
(Button.ButtonText attribute)
Adaptive (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
AdaptiveTube (Residue.RibbonMode attribute)
(RibbonMode attribute)
add() (Octree method)
add_atom() (Residue method)
add_bond() (Residue method)
add_bonds() (PluginInstance method)
(SessionClient method)
add_chain() (Molecule method)
add_child() (LayoutNode method)
add_complex() (Workspace method)
add_dssp() (PluginInstance method)
add_molecule() (Complex method)
add_new_button() (LayoutNode method)
add_new_dropdown() (LayoutNode method)
add_new_image() (LayoutNode method)
add_new_label() (LayoutNode method)
add_new_list() (LayoutNode method)
add_new_loading_bar() (LayoutNode method)
add_new_mesh() (LayoutNode method)
add_new_slider() (LayoutNode method)
add_new_text_input() (LayoutNode method)
add_new_toggle_switch() (LayoutNode method)
add_residue() (Chain method)
add_to_workspace() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
add_volume() (PluginInstance method)
(SessionClient method)
AddBonds (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
AddDSSP (class in nanome.api.structure.messages)
AddHydrogenSerializer (class in nanome.api.integration.messages)
AddToWorkspace (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
AddVolume (class in nanome.api.volumetric.messages)
AddVolumeDone (class in nanome.api.volumetric.messages)
advanced_settings (PluginListButtonType attribute)
advanced_settings() (in module nanome.api.control.callbacks)
AdvancedSettings (class in nanome.api.control.messages)
align_origins() (Complex static method)
align_to() (ComplexUtils static method)
All (ColorSchemeTarget attribute)
alt_loc (Atom attribute)
analysis (Integrations attribute)
Anchor (class in nanome.api.shapes.anchor)
anchor (in module nanome.api.shapes.shape_deprecated)
anchor_type (Anchor attribute)
anchors (Label attribute)
(Line attribute)
(Shape attribute)
AnchorSchema (class in nanome.api.schemas.shapes_schema)
AnchorSerializer (class in nanome.api.shapes.serializers)
APF (ColorScheme attribute)
append() (StringBuilder method)
append_string() (StringBuilder method)
apply_color_scheme() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
ApplyColorScheme (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
args (Process attribute)
Aromatic (Bond.Kind attribute)
(Kind attribute)
associated (Molecule attribute)
associateds (Molecule attribute)
async_callback() (in module nanome.util.asyncio)
AsyncPluginInstance (class in nanome.api.plugin_instance)
Atom (class in nanome.api.structure.atom)
(ShapeAnchorType attribute)
Atom.AtomRenderingMode (class in nanome.api.structure.atom)
atom1 (Bond attribute)
atom2 (Bond attribute)
atom_color (Atom attribute)
atom_mode (Atom attribute)
atom_rendering (Atom attribute)
atom_scale (Atom attribute)
AtomBond (ColorSchemeTarget attribute)
AtomNotFound (StreamCreationError attribute)
AtomRenderingMode (class in nanome.util.enums)
atoms (Chain attribute)
(Complex attribute)
(Molecule attribute)
(Residue attribute)
AtomSchema (class in nanome.api.schemas.structure_schemas)
AtomSerializer (class in nanome.api.structure.serializers)
AtomSerializerID (class in nanome.api.structure.serializers)
auto_size (Button.ButtonText attribute)
B
b (Color attribute)
background_color (TextInput attribute)
BallStick (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
Base (class in nanome.api.structure.base)
bfactor (Atom attribute)
BFactor (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
(ColorScheme attribute)
BFactorAF (ColorScheme attribute)
Black (Room.SkyBoxes attribute)
(SkyBoxes attribute)
Black() (nanome.util.color.Color class method)
Blue() (nanome.util.color.Color class method)
BlueSkyAndClouds (Room.SkyBoxes attribute)
(SkyBoxes attribute)
BlueSkyAndGround (Room.SkyBoxes attribute)
(SkyBoxes attribute)
bold (Button.ButtonText attribute)
Bond (class in nanome.api.structure.bond)
Bond.Kind (class in nanome.api.structure.bond)
Bonding (class in nanome.beta.nanome_sdk.session.bonding)
bonds (Atom attribute)
(Chain attribute)
(Complex attribute)
(Molecule attribute)
(Residue attribute)
BondSchema (class in nanome.api.schemas.structure_schemas)
BondSerializer (class in nanome.api.structure.serializers)
Bottom (Button.VertAlignOptions attribute)
(Label.VertAlignOptions attribute)
bottom (ToolTipPositioning attribute)
Bottom (VertAlignOptions attribute)
bottom_left (ToolTipPositioning attribute)
bottom_right (ToolTipPositioning attribute)
bounds (Button.ButtonTooltip attribute)
box_label (Complex attribute)
boxed (Complex attribute)
buffer_lines (Process attribute)
Button (class in nanome.api.ui.button)
Button.ButtonIcon (class in nanome.api.ui.button)
Button.ButtonMesh (class in nanome.api.ui.button)
Button.ButtonOutline (class in nanome.api.ui.button)
Button.ButtonSwitch (class in nanome.api.ui.button)
Button.ButtonText (class in nanome.api.ui.button)
Button.ButtonTooltip (class in nanome.api.ui.button)
Button.HorizAlignOptions (class in nanome.api.ui.button)
Button.MultiStateVariable (class in nanome.api.ui.button)
Button.VertAlignOptions (class in nanome.api.ui.button)
button_hover (UIHook.Type attribute)
button_hover() (in module nanome.api.ui.callbacks)
button_pressed() (in module nanome.api.ui.callbacks)
ButtonCallback (class in nanome.api.ui.messages)
ButtonIconSchema (class in nanome.api.schemas.ui_schemas)
ButtonMeshSchema (class in nanome.api.schemas.ui_schemas)
ButtonOutlineSchema (class in nanome.api.schemas.ui_schemas)
ButtonSchema (class in nanome.api.schemas.ui_schemas)
ButtonSerializer (class in nanome.api.ui.serializers)
ButtonSwitchSchema (class in nanome.api.schemas.ui_schemas)
ButtonTextSchema (class in nanome.api.schemas.ui_schemas)
ButtonToolTipSchema (class in nanome.api.schemas.ui_schemas)
byte (StreamDataType attribute)
C
calculate_esp (Integrations attribute)
CalculateESPSerializer (class in nanome.api.integration.messages)
caller_name() (Logs static method)
CD (class in nanome.api.files.messages)
cd() (Files method)
center (ToolTipPositioning attribute)
center_on_structures() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
CenterOnStructures (class in nanome.api.schemas.api_definitions)
chain (Atom attribute)
(Bond attribute)
Chain (class in nanome.api.structure.chain)
(ColorScheme attribute)
chain (Residue attribute)
chains (Complex attribute)
(Molecule attribute)
ChainSchema (class in nanome.api.schemas.structure_schemas)
ChainSerializer (class in nanome.api.structure.serializers)
children (LayoutNode attribute)
Chothia (ColorScheme attribute)
Clear() (nanome.util.color.Color class method)
clear() (StringBuilder method)
clear_children() (LayoutNode method)
client (NanomePlugin attribute)
(Workspace attribute)
client_connection (PacketTypes attribute)
client_disconnection (PacketTypes attribute)
clone() (DropdownItem method)
(LayoutNode method)
(UIBase method)
close_on_selected (DropdownItem attribute)
Coil (Residue.RibbonMode attribute)
(Residue.SecondaryStructure attribute)
(RibbonMode attribute)
(SecondaryStructure attribute)
color (Button.ButtonIcon attribute)
(Button.ButtonMesh attribute)
(Button.ButtonOutline attribute)
(Button.ButtonText attribute)
(ButtonIconSchema attribute)
Color (class in nanome.util.color)
color (Image attribute)
(Shape attribute)
(StreamType attribute)
ColorField (class in nanome.api.schemas.ui_schemas)
(class in nanome.api.schemas.util_schemas)
colors (Mesh attribute)
ColorScheme (class in nanome.util.enums)
ColorSchemeTarget (class in nanome.util.enums)
combine_ligands() (ComplexUtils static method)
CommandMessageSerializer (class in nanome.api.serializers)
complex (Atom attribute)
(Bond attribute)
(Chain attribute)
Complex (class in nanome.api.structure.complex)
complex (Molecule attribute)
(Residue attribute)
Complex (ShapeAnchorType attribute)
complex_added() (in module nanome.api.structure.callbacks)
complex_position_rotation (StreamType attribute)
complex_removed() (in module nanome.api.structure.callbacks)
complex_updated() (in module nanome.api.structure.callbacks)
ComplexAddedRemoved (class in nanome.api.structure.messages)
complexes (Workspace attribute)
ComplexIO (class in nanome.api.structure.io.complex_io)
ComplexIO.MMCIFSaveOptions (class in nanome.api.structure.io.complex_io)
ComplexIO.PDBSaveOptions (class in nanome.api.structure.io.complex_io)
ComplexIO.SDFSaveOptions (class in nanome.api.structure.io.complex_io)
ComplexSchema (class in nanome.api.schemas.structure_schemas)
ComplexSerializer (class in nanome.api.structure.serializers)
ComplexUpdated (class in nanome.api.structure.messages)
ComplexUpdatedHook (class in nanome.api.structure.messages)
ComplexUtils (class in nanome.util.complex_utils)
compose_transformation_matrix() (nanome.util.matrix.Matrix class method)
compute_hbonds() (nanome.api.structure.client.workspace_client.WorkspaceClient class method)
ComputeHBonds (class in nanome.api.structure.messages)
computing (Complex attribute)
configure_main_process_logging() (in module nanome.beta.nanome_sdk.logs)
configure_session_logging() (in module nanome.beta.nanome_sdk.logs)
conformer_count (Atom attribute)
(Bond attribute)
(Molecule attribute)
Connect (class in nanome.api.control.messages)
connect() (in module nanome.api.control.callbacks)
(PluginInstanceRedisInterface method)
connect_plugin() (PluginServer method)
connect_stdin_stdout() (in module nanome.beta.nanome_sdk.utils)
content (Button.ButtonTooltip attribute)
(LayoutNode attribute)
ContentSchema (class in nanome.api.schemas.ui_schemas)
convert_bytes_to_packet() (in module nanome.beta.nanome_sdk.utils)
convert_to_conformers() (Complex method)
(ComplexUtils static method)
convert_to_frames() (Complex method)
(ComplexUtils static method)
copy() (Color method)
copy_conformer() (Molecule method)
CovalentDouble (Bond.Kind attribute)
(Kind attribute)
CovalentSingle (Bond.Kind attribute)
(Kind attribute)
CovalentTriple (Bond.Kind attribute)
(Kind attribute)
CP (class in nanome.api.files.messages)
cp() (Files method)
Crashed (StreamInterruptReason attribute)
create_atom_stream() (PluginInstance method)
create_child_node() (LayoutNode method)
create_conformer() (Molecule method)
create_multi_state_schema() (in module nanome.api.schemas.ui_schemas)
create_new_menu() (UIManager method)
create_parser() (in module nanome.setup_config)
(Plugin static method)
(in module nanome.util.config)
create_reading_stream() (PluginInstance method)
(SessionClient method)
create_shape() (PluginInstance method)
create_stream() (PluginInstance method)
create_texture_file() (MeshSerializer method)
create_writing_stream() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
CreateStream (class in nanome.api.streams.messages)
CreateStreamResult (class in nanome.api.streams.messages)
CreateWritingStream (class in nanome.api.schemas.api_definitions)
cross() (nanome.util.vector3.Vector3 class method)
cryo_em (VolumeType attribute)
current_conformer (Atom attribute)
(Bond attribute)
(Molecule attribute)
current_frame (Complex attribute)
current_value (Slider attribute)
custom_data (Plugin attribute)
(PluginInstance attribute)
cwd_path (Process attribute)
D
dash_distance (Line attribute)
dash_length (Line attribute)
data_type (Stream attribute)
DataType (Stream attribute)
debug (Logs.LogType attribute)
debug() (nanome.util.logs.Logs class method)
default (VolumeType attribute)
delete() (Macro method)
delete_conformer() (Molecule method)
DeleteMacro (class in nanome.api.macro.messages)
DeleteShape (class in nanome.api.shapes.messages)
density (VolumeType attribute)
density_diff (VolumeType attribute)
deprecated() (Logs static method)
description (LoadingBar attribute)
deserialize() (AddBonds method)
(AddDSSP method)
(AddHydrogenSerializer method)
(AddToWorkspace method)
(AddVolume method)
(AddVolumeDone method)
(AdvancedSettings method)
(AnchorSerializer method)
(ApplyColorScheme method)
(AtomSerializer method)
(AtomSerializerID method)
(BondSerializer method)
(ButtonCallback method)
(ButtonSerializer method)
(CD method)
(CP method)
(CalculateESPSerializer method)
(ChainSerializer method)
(ComplexAddedRemoved method)
(ComplexSerializer method)
(ComplexUpdated method)
(ComplexUpdatedHook method)
(ComputeHBonds method)
(Connect method)
(CreateStream method)
(CreateStreamResult method)
(DeleteMacro method)
(DeleteShape method)
(DestroyStream method)
(DirectoryRequest method)
(DropdownCallback method)
(DropdownItemSerializer method)
(DropdownSerializer method)
(ExportFileSerializer method)
(ExportFiles method)
(ExportFilesItem method)
(ExportLocationsSerializer method)
(ExportSmilesSerializer method)
(FeedStream method)
(FeedStreamDone method)
(FileMeta method)
(FileRequest method)
(FileSave method)
(GenerateMoleculeImageSerializer method)
(Get method)
(GetControllerTransforms method)
(GetControllerTransformsResponse method)
(GetMacros method)
(GetMacrosResponse method)
(GetMenuTransform method)
(GetMenuTransformResponse method)
(GetPresenterInfo method)
(GetPresenterInfoResponse method)
(ImageCallback method)
(ImageSerializer method)
(ImportFileSerializer method)
(ImportSmilesSerializer method)
(IntegrationSerializer method)
(InterruptStream method)
(LS method)
(LabelSerializer method)
,
[1]
(LayoutNodeSerializer method)
(LayoutNodeSerializerDeep method)
(LineSerializer method)
(LoadFile method)
(LoadFileDone method)
(LoadFileDoneInfo method)
(LoadFileInfo method)
(LoadingBarSerializer method)
(MKDir method)
(MV method)
(MacroSerializer method)
(MenuCallback method)
(MenuSerializer method)
(MeshSerializer method)
,
[1]
(MoleculeSerializer method)
(OpenURL method)
(PWD method)
(PositionStructures method)
(PositionStructuresDone method)
(PresenterChange method)
(Put method)
(RM method)
(RMDir method)
(ReceiveComplexList method)
(ReceiveComplexes method)
(ReceiveWorkspace method)
(RemoveHydrogenSerializer method)
(RequestComplexList method)
(RequestComplexes method)
(RequestSubstructure method)
(RequestWorkspace method)
(ResidueSerializer method)
(Run method)
(RunMacro method)
(SaveMacro method)
(SelectionChanged method)
(SelectionChangedHook method)
(SendNotification method)
(SetMenuTransform method)
(SetPluginListButton method)
(SetShape method)
(SetSkybox method)
(ShapeSerializer method)
(SliderCallback method)
(SliderSerializer method)
(SphereSerializer method)
(StartMinimizationSerializer method)
(StopMacro method)
(StopMinimizationSerializer method)
(StructurePrepSerializer method)
(SubstructureSerializer method)
(TextInputCallback method)
(TextInputSerializer method)
(UIBaseSerializer method)
(UIHook method)
(UIListSerializer method)
(UnitCellSerializer method)
(UpdateContent method)
(UpdateMenu method)
(UpdateNode method)
(UpdateStructures method)
(UpdateStructuresDeepDone method)
(UpdateWorkspace method)
(VolumeDataSerializer method)
(VolumeLayerSerializer method)
(VolumePropertiesSerializer method)
(WorkspaceSerializer method)
deserialize_command() (CommandMessageSerializer method)
destroy() (Shape method)
(Stream method)
destroy_multiple() (nanome.api.shapes.shape.Shape class method)
destroy_stream() (PluginInstanceRedisInterface method)
DestroyStream (class in nanome.api.streams.messages)
determine_structure_schema() (StructureSchema method)
Direction (Stream attribute)
direction (Stream attribute)
DirectoryEntry (class in nanome.util.file)
DirectoryErrorCode (class in nanome.util.file)
DirectoryRequest (class in nanome.api.files.messages)
DirectoryRequestOptions (class in nanome.util.file)
DirectoryRequestResult (class in nanome.util.file)
disable_on_press (Button attribute)
display_columns (UIList attribute)
display_rows (UIList attribute)
distance() (nanome.util.vector3.Vector3 class method)
donor (Atom attribute)
DonorAcceptor (ColorScheme attribute)
dot() (nanome.util.vector3.Vector3 class method)
(Quaternion method)
Dropdown (class in nanome.api.ui.dropdown)
dropdown_item_clicked() (in module nanome.api.ui.callbacks)
DropdownCallback (class in nanome.api.ui.messages)
DropdownItem (class in nanome.api.ui.dropdown_item)
DropdownItemSchema (class in nanome.api.schemas.ui_schemas)
DropdownItemSerializer (class in nanome.api.ui.serializers)
DropdownSchema (class in nanome.api.schemas.ui_schemas)
DropdownSerializer (class in nanome.api.ui.serializers)
dump() (ContentSchema method)
(StructureSchema method)
E
ebutton (UIBaseSerializer.ContentType attribute)
edropdown (UIBaseSerializer.ContentType attribute)
eimage (UIBaseSerializer.ContentType attribute)
elabel (UIBaseSerializer.ContentType attribute)
electrostatic (VolumeType attribute)
Element (ColorScheme attribute)
elist (UIBaseSerializer.ContentType attribute)
ellipsis (Button.ButtonText attribute)
eloadingBar (UIBaseSerializer.ContentType attribute)
emesh (UIBaseSerializer.ContentType attribute)
emit() (SessionLoggingHandler method)
enabled (Button.ButtonMesh attribute)
(ButtonMeshSchema attribute)
(LayoutNode attribute)
(Menu attribute)
EnumField (class in nanome.api.schemas.util_schemas)
EPS (Quaternion attribute)
equals() (Quaternion method)
(Vector3 method)
error (Logs.LogType attribute)
(NotificationTypes attribute)
error() (nanome.util.logs.Logs class method)
ErrorCode (LoadInfoDone attribute)
eslider (UIBaseSerializer.ContentType attribute)
etextInput (UIBaseSerializer.ContentType attribute)
exception_wrapper() (in module nanome.util.asyncio)
executable_path (Process attribute)
exists (Atom attribute)
(Bond attribute)
expand (LayoutNode.SizingTypes attribute)
(SizingTypes attribute)
export_file (Integrations attribute)
export_locations (Integrations attribute)
ExportFiles (class in nanome.api.files.messages)
ExportFileSerializer (class in nanome.api.integration.messages)
ExportFilesItem (class in nanome.api.files.messages)
ExportFormats (class in nanome.util.enums)
ExportLocationsSerializer (class in nanome.api.integration.messages)
ExportSmilesSerializer (class in nanome.api.integration.messages)
F
failure (LoadingBar attribute)
feed_stream() (in module nanome.api.streams.callbacks)
FeedStream (class in nanome.api.streams.messages)
FeedStreamDone (class in nanome.api.streams.messages)
fetch() (in module nanome.util.config)
file_path (Image attribute)
file_unreachable (FileErrorCode attribute)
FileData (class in nanome.util.file)
FileError (class in nanome.util.file)
FileErrorCode (class in nanome.util.file)
FileMeta (class in nanome.api.files.messages)
(class in nanome.util.file)
FileRequest (class in nanome.api.files.messages)
Files (class in nanome.api.files.models)
FileSave (class in nanome.api.files.messages)
FileSaveData (class in nanome.util.file)
fill (Image.ScalingOptions attribute)
(ScalingOptions attribute)
filter() (RemoteLoggingFilter method)
find_ancestor() (LayoutNode method)
find_command() (UIManager method)
find_content() (Menu method)
find_node() (LayoutNode method)
fit (Image.ScalingOptions attribute)
(ScalingOptions attribute)
fixed (LayoutNode.PaddingTypes attribute)
(LayoutNode.SizingTypes attribute)
(PaddingTypes attribute)
(SizingTypes attribute)
FlatSurface (VolumeVisualStyle attribute)
flatten_attributes() (ButtonSchema method)
float (StreamDataType attribute)
FloatRoundedField (class in nanome.api.schemas.ui_schemas)
folder_unreachable (DirectoryErrorCode attribute)
font_size (Label attribute)
formal_charge (Atom attribute)
forward_dist (LayoutNode attribute)
from_hex() (nanome.util.color.Color class method)
from_int() (nanome.util.color.Color class method)
from_json() (LayoutNodeIO method)
(MenuIO method)
from_matrix() (nanome.util.quaternion.Quaternion class method)
from_mmcif() (ComplexIO method)
from_pdb() (ComplexIO method)
from_quaternion() (nanome.util.matrix.Matrix class method)
from_sdf() (ComplexIO method)
from_vector3() (nanome.util.matrix.Matrix class method)
full_name (Complex attribute)
G
g (Color attribute)
generate_molecule_image (Integrations attribute)
GenerateMoleculeImageSerializer (class in nanome.api.integration.messages)
Get (class in nanome.api.files.messages)
get() (Files method)
get_all_content() (Menu method)
get_all_nodes() (Menu method)
get_all_selected() (Complex method)
get_args() (IntegrationRequest method)
get_children() (LayoutNode method)
get_complex_to_workspace_matrix() (Complex method)
get_conjugate() (Quaternion method)
get_content() (LayoutNode method)
get_copy() (Quaternion method)
(Vector3 method)
get_determinant() (Matrix method)
get_inverse() (Matrix method)
get_ligands() (Molecule method)
get_live() (nanome.api.macro.macro.Macro class method)
get_minor() (Matrix method)
get_near() (Octree method)
get_near_append() (Octree method)
get_plugin_data() (PluginInstanceRedisInterface method)
get_plugin_identifier() (nanome.api.macro.macro.Macro class method)
get_proteins() (Molecule method)
get_rank() (Matrix method)
get_selected() (Complex method)
get_solvents() (Molecule method)
get_substructures() (Molecule method)
get_transpose() (Matrix method)
get_workspace_to_complex_matrix() (Complex method)
get_workspace_to_world_matrix() (Workspace method)
get_world_to_workspace_matrix() (Workspace method)
GetControllerTransforms (class in nanome.api.control.messages)
GetControllerTransformsResponse (class in nanome.api.control.messages)
GetMacros (class in nanome.api.macro.messages)
GetMacrosResponse (class in nanome.api.macro.messages)
GetMenuTransform (class in nanome.api.ui.messages)
GetMenuTransformResponse (class in nanome.api.ui.messages)
GetPresenterInfo (class in nanome.api.user.messages)
GetPresenterInfoResponse (class in nanome.api.user.messages)
global_offset (Anchor attribute)
Gray() (nanome.util.color.Color class method)
Graydient (Room.SkyBoxes attribute)
(SkyBoxes attribute)
Green() (nanome.util.color.Color class method)
Grey() (nanome.util.color.Color class method)
H
handle() (SessionLoggingHandler method)
handle_exception() (in module nanome.util.asyncio)
handle_session_log_packet() (PluginServer method)
handle_ui_command() (UIManager method)
has_org (PresenterInfo attribute)
height (Menu attribute)
Helix (Residue.SecondaryStructure attribute)
(SecondaryStructure attribute)
het_surfaced (Atom attribute)
hex (Color attribute)
highlighted (Button.MultiStateVariable attribute)
HorizAlignOptions (class in nanome.util.enums)
horizontal (LayoutNode.LayoutTypes attribute)
(LayoutTypes attribute)
horizontal_align (Button.ButtonText attribute)
hydrogen (Integrations attribute)
Hydrophobicity (ColorScheme attribute)
I
id (Process attribute)
(Stream attribute)
identity() (nanome.util.matrix.Matrix class method)
idle (Button.MultiStateVariable attribute)
ignored_alt_locs (Residue attribute)
Image (class in nanome.api.ui.image)
Image.ScalingOptions (class in nanome.api.ui.image)
image_held (UIHook.Type attribute)
image_held() (in module nanome.api.ui.callbacks)
image_pressed (UIHook.Type attribute)
image_pressed() (in module nanome.api.ui.callbacks)
image_released (UIHook.Type attribute)
image_released() (in module nanome.api.ui.callbacks)
ImageCallback (class in nanome.api.ui.messages)
ImageSchema (class in nanome.api.schemas.ui_schemas)
ImageSerializer (class in nanome.api.ui.serializers)
IMGT (ColorScheme attribute)
import_file (Integrations attribute)
ImportFileSerializer (class in nanome.api.integration.messages)
ImportSmilesSerializer (class in nanome.api.integration.messages)
in_conformer (Atom attribute)
(Bond attribute)
index (Base attribute)
(Menu attribute)
(Shape attribute)
index_tag (Complex attribute)
info (Logs.LogType attribute)
init_object() (in module nanome.api.schemas.structure_schemas)
(in module nanome.api.schemas.ui_schemas)
input_text (TextInput attribute)
instance (UIManager attribute)
Integration (class in nanome.api.integration.integration)
integration() (in module nanome.api.integration.callbacks)
IntegrationRequest (class in nanome.api.integration.integration_request)
Integrations (class in nanome.util.enums)
IntegrationSerializer (class in nanome.api.integration.messages)
interactions (Integrations attribute)
interactive_mode() (in module nanome.setup_config)
InterruptStream (class in nanome.api.streams.messages)
invalid_path (FileError attribute)
io (Complex attribute)
(LayoutNode attribute)
(Menu attribute)
io_error (FileError attribute)
is_async (AsyncPluginInstance attribute)
(PluginInstance attribute)
is_het (Atom attribute)
items (Dropdown attribute)
(UIList attribute)
K
Kabat (ColorScheme attribute)
keep_alive (PacketTypes attribute)
keep_alive() (PluginServer method)
kind (Bond attribute)
Kind (class in nanome.util.enums)
kinds (Bond attribute)
L
Label (class in nanome.api.shapes.label)
(class in nanome.api.ui.label)
label (Process attribute)
Label (ShapeType attribute)
label (StreamType attribute)
Label.HorizAlignOptions (class in nanome.api.ui.label)
Label.VertAlignOptions (class in nanome.api.ui.label)
label_text (Atom attribute)
(Residue attribute)
labeled (Atom attribute)
(Residue attribute)
LabelSchema (class in nanome.api.schemas.shapes_schema)
(class in nanome.api.schemas.ui_schemas)
LabelSerializer (class in nanome.api.shapes.serializers)
(class in nanome.api.ui.serializers)
layer (LayoutNode attribute)
layout_orientation (LayoutNode attribute)
LayoutNode (class in nanome.api.ui.layout_node)
LayoutNode.LayoutTypes (class in nanome.api.ui.layout_node)
LayoutNode.PaddingTypes (class in nanome.api.ui.layout_node)
LayoutNode.SizingTypes (class in nanome.api.ui.layout_node)
LayoutNodeIO (class in nanome.api.ui.io.layout_node_io)
LayoutNodeSchema (class in nanome.api.schemas.ui_schemas)
LayoutNodeSerializer (class in nanome.api.ui.serializers)
LayoutNodeSerializerDeep (class in nanome.api.ui.serializers)
LayoutTypes (class in nanome.util.enums)
Left (Button.HorizAlignOptions attribute)
(HorizAlignOptions attribute)
(Label.HorizAlignOptions attribute)
(TextInput.HorizAlignOptions attribute)
left (ToolTipPositioning attribute)
Ligand (Substructure.SubstructureType attribute)
(SubstructureType attribute)
Line (class in nanome.api.shapes.line)
(ShapeType attribute)
line_spacing (Button.ButtonText attribute)
LineSchema (class in nanome.api.schemas.shapes_schema)
LineSerializer (class in nanome.api.shapes.serializers)
live_logs (PacketTypes attribute)
load() (ButtonSchema method)
(ContentSchema method)
(StructureSchema method)
load_icon_values() (ButtonSchema method)
load_mesh_values() (ButtonSchema method)
load_outline_values() (ButtonSchema method)
load_settings() (in module nanome.util.config)
load_switch_values() (ButtonSchema method)
load_text_values() (ButtonSchema method)
load_tooltip_values() (ButtonSchema method)
LoadFile (class in nanome.api.files.messages)
LoadFileDone (class in nanome.api.files.messages)
LoadFileDoneInfo (class in nanome.api.files.messages)
LoadFileErrorCode (class in nanome.util.enums)
LoadFileInfo (class in nanome.api.files.messages)
LoadInfoDone (class in nanome.util.file)
loading_failed (LoadFileErrorCode attribute)
LoadingBar (class in nanome.api.ui.loading_bar)
LoadingBarSchema (class in nanome.api.schemas.ui_schemas)
LoadingBarSerializer (class in nanome.api.ui.serializers)
local_files_access (Permissions attribute)
local_offset (Anchor attribute)
locked (Complex attribute)
(Menu attribute)
logic (Macro attribute)
Logs (class in nanome.util.logs)
Logs.LogType (class in nanome.util.logs)
logs_request (PacketTypes attribute)
LS (class in nanome.api.files.messages)
ls() (Files method)
M
Macro (class in nanome.api.macro.macro)
MacroSerializer (class in nanome.api.macro.serializers)
magnitude (Vector3 attribute)
main() (in module nanome.plugin_init)
(in module nanome.setup_config)
make_atom() (AtomSchema method)
make_bond() (BondSchema method)
make_chain() (ChainSchema method)
make_complex() (ComplexSchema method)
make_menu() (MenuSchema method)
make_molecule() (MoleculeSchema method)
make_obj() (ButtonSchema method)
(DropdownItemSchema method)
(DropdownSchema method)
(ImageSchema method)
(LabelSchema method)
(LayoutNodeSchema method)
(LoadingBarSchema method)
(MeshSchema method)
(SliderSchema method)
(TextInputSchema method)
(UIListSchema method)
make_presenter_info() (PresenterInfoSchema method)
make_residue() (ResidueSchema method)
make_vector3() (Vector3Schema method)
make_workspace() (WorkspaceSchema method)
master_change (PacketTypes attribute)
Matrix (class in nanome.util.matrix)
MatrixException
max_displayed_items (Dropdown attribute)
max_length (TextInput attribute)
max_size (Button.ButtonText attribute)
max_value (Slider attribute)
Menu (class in nanome.api.ui.menu)
menu (PluginInstance attribute)
menu_toggled() (in module nanome.api.ui.callbacks)
MenuCallback (class in nanome.api.ui.messages)
MenuIO (class in nanome.api.ui.io.menu_io)
MenuSchema (class in nanome.api.schemas.ui_schemas)
MenuSerializer (class in nanome.api.ui.serializers)
Mesh (class in nanome.api.shapes.mesh)
(ShapeType attribute)
(VolumeVisualStyle attribute)
(class in nanome.api.ui.mesh)
mesh_color (Mesh attribute)
MeshSchema (class in nanome.api.schemas.shapes_schema)
(class in nanome.api.schemas.ui_schemas)
MeshSerializer (class in nanome.api.shapes.serializers)
(class in nanome.api.ui.serializers)
message (NotificationTypes attribute)
message() (nanome.util.logs.Logs class method)
message_to_client (PacketTypes attribute)
message_to_plugin (PacketTypes attribute)
Middle (Button.HorizAlignOptions attribute)
(Button.VertAlignOptions attribute)
(HorizAlignOptions attribute)
(Label.HorizAlignOptions attribute)
(Label.VertAlignOptions attribute)
(TextInput.HorizAlignOptions attribute)
(VertAlignOptions attribute)
min_size (Button.ButtonText attribute)
min_value (Slider attribute)
minimization (Integrations attribute)
missing_permission (FileErrorCode attribute)
MKDir (class in nanome.api.files.messages)
mkdir() (Files method)
MMCIF (ExportFormats attribute)
MMCIFSaveOptions (class in nanome.util.complex_save_options)
molecule (Atom attribute)
(Bond attribute)
(Chain attribute)
Molecule (class in nanome.api.structure.molecule)
molecule (Residue attribute)
molecules (Complex attribute)
MoleculeSchema (class in nanome.api.schemas.structure_schemas)
MoleculeSerializer (class in nanome.api.structure.serializers)
Monochrome (ColorScheme attribute)
move() (Octree method)
move_conformer() (Molecule method)
MV (class in nanome.api.files.messages)
mv() (Files method)
N
name (Atom attribute)
(Button attribute)
(Chain attribute)
(Complex attribute)
(DropdownItem attribute)
(LayoutNode attribute)
(Molecule attribute)
(Plugin attribute)
(Residue attribute)
(Substructure attribute)
name() (AddBonds method)
(AddDSSP method)
(AddHydrogenSerializer method)
(AddToWorkspace method)
(AddVolume method)
(AddVolumeDone method)
(AdvancedSettings method)
(AnchorSerializer method)
(ApplyColorScheme method)
(AtomSerializer method)
(AtomSerializerID method)
(BondSerializer method)
(ButtonCallback method)
(ButtonSerializer method)
(CD method)
(CP method)
(CalculateESPSerializer method)
(ChainSerializer method)
(ComplexAddedRemoved method)
(ComplexSerializer method)
(ComplexUpdated method)
(ComplexUpdatedHook method)
(ComputeHBonds method)
(Connect method)
(CreateStream method)
(CreateStreamResult method)
(DeleteMacro method)
(DeleteShape method)
(DestroyStream method)
(DirectoryRequest method)
(DropdownCallback method)
(DropdownItemSerializer method)
(DropdownSerializer method)
(ExportFileSerializer method)
(ExportFiles method)
(ExportFilesItem method)
(ExportLocationsSerializer method)
(ExportSmilesSerializer method)
(FeedStream method)
(FeedStreamDone method)
(FileMeta method)
(FileRequest method)
(FileSave method)
(GenerateMoleculeImageSerializer method)
(Get method)
(GetControllerTransforms method)
(GetControllerTransformsResponse method)
(GetMacros method)
(GetMacrosResponse method)
(GetMenuTransform method)
(GetMenuTransformResponse method)
(GetPresenterInfo method)
(GetPresenterInfoResponse method)
(ImageCallback method)
(ImageSerializer method)
(ImportFileSerializer method)
(ImportSmilesSerializer method)
(IntegrationSerializer method)
(InterruptStream method)
(LS method)
(LabelSerializer method)
,
[1]
(LayoutNodeSerializer method)
(LayoutNodeSerializerDeep method)
(LineSerializer method)
(LoadFile method)
(LoadFileDone method)
(LoadFileDoneInfo method)
(LoadFileInfo method)
(LoadingBarSerializer method)
(MKDir method)
(MV method)
(MacroSerializer method)
(MenuCallback method)
(MenuSerializer method)
(MeshSerializer method)
,
[1]
(MoleculeSerializer method)
(OpenURL method)
(PWD method)
(PositionStructures method)
(PositionStructuresDone method)
(PresenterChange method)
(Put method)
(RM method)
(RMDir method)
(ReceiveComplexList method)
(ReceiveComplexes method)
(ReceiveWorkspace method)
(RemoveHydrogenSerializer method)
(RequestComplexList method)
(RequestComplexes method)
(RequestSubstructure method)
(RequestWorkspace method)
(ResidueSerializer method)
(Run method)
(RunMacro method)
(SaveMacro method)
(SelectionChanged method)
(SelectionChangedHook method)
(SendNotification method)
(SetMenuTransform method)
(SetPluginListButton method)
(SetShape method)
(SetSkybox method)
(ShapeSerializer method)
(SliderCallback method)
(SliderSerializer method)
(SphereSerializer method)
(StartMinimizationSerializer method)
(StopMacro method)
(StopMinimizationSerializer method)
(StructurePrepSerializer method)
(SubstructureSerializer method)
(TextInputCallback method)
(TextInputSerializer method)
(UIBaseSerializer method)
(UIHook method)
(UIListSerializer method)
(UnitCellSerializer method)
(UpdateContent method)
(UpdateMenu method)
(UpdateNode method)
(UpdateStructures method)
(UpdateStructuresDeepDone method)
(UpdateWorkspace method)
(VolumeDataSerializer method)
(VolumeLayerSerializer method)
(VolumePropertiesSerializer method)
(WorkspaceSerializer method)
names (Molecule attribute)
Nanome (ExportFormats attribute)
nanome (module)
nanome.api (module)
nanome.api.control (module)
nanome.api.control.callbacks (module)
nanome.api.control.messages (module)
nanome.api.files (module)
nanome.api.files.messages (module)
nanome.api.files.models (module)
nanome.api.integration (module)
nanome.api.integration.callbacks (module)
nanome.api.integration.integration (module)
nanome.api.integration.integration_request (module)
nanome.api.integration.messages (module)
nanome.api.macro (module)
nanome.api.macro.macro (module)
nanome.api.macro.messages (module)
nanome.api.macro.serializers (module)
nanome.api.plugin (module)
nanome.api.plugin_instance (module)
nanome.api.room (module)
nanome.api.room.messages (module)
nanome.api.room.models (module)
nanome.api.schemas (module)
nanome.api.schemas.api_definitions (module)
nanome.api.schemas.shapes_schema (module)
nanome.api.schemas.stream_schemas (module)
nanome.api.schemas.structure_schemas (module)
nanome.api.schemas.ui_schemas (module)
nanome.api.schemas.user_schemas (module)
nanome.api.schemas.util_schemas (module)
nanome.api.serializers (module)
nanome.api.shapes (module)
nanome.api.shapes.anchor (module)
nanome.api.shapes.label (module)
nanome.api.shapes.line (module)
nanome.api.shapes.mesh (module)
nanome.api.shapes.messages (module)
nanome.api.shapes.serializers (module)
nanome.api.shapes.shape (module)
nanome.api.shapes.shape_deprecated (module)
nanome.api.shapes.sphere (module)
nanome.api.streams (module)
nanome.api.streams.callbacks (module)
nanome.api.streams.messages (module)
nanome.api.streams.stream (module)
nanome.api.structure (module)
nanome.api.structure.atom (module)
nanome.api.structure.base (module)
nanome.api.structure.bond (module)
nanome.api.structure.callbacks (module)
nanome.api.structure.chain (module)
nanome.api.structure.client (module)
nanome.api.structure.client.workspace_client (module)
nanome.api.structure.complex (module)
nanome.api.structure.io (module)
nanome.api.structure.io.complex_io (module)
nanome.api.structure.messages (module)
nanome.api.structure.models (module)
nanome.api.structure.molecule (module)
nanome.api.structure.residue (module)
nanome.api.structure.serializers (module)
nanome.api.structure.substructure (module)
nanome.api.structure.workspace (module)
nanome.api.ui (module)
nanome.api.ui.button (module)
nanome.api.ui.callbacks (module)
nanome.api.ui.dropdown (module)
nanome.api.ui.dropdown_item (module)
nanome.api.ui.image (module)
nanome.api.ui.io (module)
nanome.api.ui.io.layout_node_io (module)
nanome.api.ui.io.menu_io (module)
nanome.api.ui.label (module)
nanome.api.ui.layout_node (module)
nanome.api.ui.loading_bar (module)
nanome.api.ui.menu (module)
nanome.api.ui.mesh (module)
nanome.api.ui.messages (module)
nanome.api.ui.serializers (module)
nanome.api.ui.slider (module)
nanome.api.ui.text_input (module)
nanome.api.ui.ui_base (module)
nanome.api.ui.ui_list (module)
nanome.api.user (module)
nanome.api.user.callbacks (module)
nanome.api.user.messages (module)
nanome.api.user.presenter_info (module)
nanome.api.volumetric (module)
nanome.api.volumetric.io (module)
nanome.api.volumetric.messages (module)
nanome.api.volumetric.models (module)
nanome.api.volumetric.serializers (module)
nanome.beta (module)
nanome.beta.nanome_sdk (module)
nanome.beta.nanome_sdk.logs (module)
nanome.beta.nanome_sdk.plugin_server (module)
nanome.beta.nanome_sdk.session (module)
nanome.beta.nanome_sdk.session.bonding (module)
nanome.beta.nanome_sdk.session.nanome_plugin (module)
nanome.beta.nanome_sdk.session.session_client (module)
nanome.beta.nanome_sdk.session.ui_manager (module)
nanome.beta.nanome_sdk.utils (module)
nanome.beta.redis_interface (module)
nanome.plugin_init (module)
nanome.setup_config (module)
nanome.util (module)
nanome.util.asyncio (module)
nanome.util.color (module)
nanome.util.complex_save_options (module)
nanome.util.complex_utils (module)
nanome.util.config (module)
nanome.util.enums (module)
nanome.util.file (module)
nanome.util.logs (module)
nanome.util.matrix (module)
nanome.util.octree (module)
nanome.util.process (module)
nanome.util.quaternion (module)
nanome.util.simple_callbacks (module)
nanome.util.stream (module)
nanome.util.string_builder (module)
nanome.util.vector3 (module)
NanomePlugin (class in nanome.beta.nanome_sdk.session.nanome_plugin)
no_error (DirectoryErrorCode attribute)
(FileError attribute)
(FileErrorCode attribute)
(LoadFileErrorCode attribute)
NoError (StreamCreationError attribute)
normalize() (Vector3 method)
normalized (Vector3 attribute)
normals (Mesh attribute)
NotificationTypes (class in nanome.util.enums)
number (TextInput attribute)
O
occupancy (Atom attribute)
Occupancy (ColorScheme attribute)
Octree (class in nanome.util.octree)
off_color (Button.ButtonSwitch attribute)
on_advanced_settings() (PluginInstance method)
on_color (Button.ButtonSwitch attribute)
on_complex_added() (PluginInstance method)
on_complex_added_removed() (NanomePlugin method)
on_complex_list_changed() (PluginInstance method)
on_complex_removed() (PluginInstance method)
on_presenter_change() (PluginInstance method)
on_run() (PluginInstance method)
on_start() (NanomePlugin method)
on_stop() (NanomePlugin method)
(PluginInstance method)
open_url() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
OpenURL (class in nanome.api.control.messages)
OpenUrl (class in nanome.api.schemas.api_definitions)
opts (AnchorSchema attribute)
(AtomSchema attribute)
(BondSchema attribute)
(ButtonIconSchema attribute)
(ButtonMeshSchema attribute)
(ButtonOutlineSchema attribute)
(ButtonSchema attribute)
(ButtonSwitchSchema attribute)
(ButtonTextSchema attribute)
(ButtonToolTipSchema attribute)
(ChainSchema attribute)
(ComplexSchema attribute)
(ContentSchema attribute)
(DropdownItemSchema attribute)
(DropdownSchema attribute)
(ImageSchema attribute)
(LabelSchema attribute)
,
[1]
(LayoutNodeSchema attribute)
(LineSchema attribute)
(LoadingBarSchema attribute)
(MenuSchema attribute)
(MeshSchema attribute)
,
[1]
(MoleculeSchema attribute)
(PositionSchema attribute)
(PresenterInfoSchema attribute)
(ResidueSchema attribute)
(ShapeSchema attribute)
(SliderSchema attribute)
(SphereSchema attribute)
(StreamSchema attribute)
(StructureSchema attribute)
(TextInputSchema attribute)
(UIListSchema attribute)
(Vector3Schema attribute)
(WorkspaceSchema attribute)
org_id (PresenterInfo attribute)
org_name (PresenterInfo attribute)
output (AddBonds attribute)
(AddToWorkspace attribute)
(ApplyColorScheme attribute)
(CenterOnStructures attribute)
(CreateWritingStream attribute)
(OpenUrl attribute)
(RequestComplexList attribute)
(RequestComplexes attribute)
(RequestControllerTransforms attribute)
(RequestPresenterInfo attribute)
(RequestWorkspace attribute)
(SendNotification attribute)
(StreamUpdate attribute)
(UpdateStructuresDeep attribute)
(UpdateStructuresShallow attribute)
(UpdateWorkspace attribute)
(ZoomOnStructures attribute)
output_text (Process attribute)
P
PacketTypes (class in nanome.beta.nanome_sdk.utils)
padding (LayoutNode attribute)
padding_bottom (Button.ButtonText attribute)
(TextInput attribute)
padding_left (Button.ButtonText attribute)
(TextInput attribute)
padding_right (Button.ButtonText attribute)
(TextInput attribute)
padding_top (Button.ButtonText attribute)
(TextInput attribute)
padding_type (LayoutNode attribute)
PaddingTypes (class in nanome.util.enums)
params (AddBonds attribute)
(AddToWorkspace attribute)
(ApplyColorScheme attribute)
(CenterOnStructures attribute)
(CreateWritingStream attribute)
(OpenUrl attribute)
(RequestComplexList attribute)
(RequestComplexes attribute)
(RequestControllerTransforms attribute)
(RequestPresenterInfo attribute)
(RequestWorkspace attribute)
(SendNotification attribute)
(StreamUpdate attribute)
(UpdateStructuresDeep attribute)
(UpdateStructuresShallow attribute)
(UpdateWorkspace attribute)
(ZoomOnStructures attribute)
parent (LayoutNode attribute)
parse_args() (in module nanome.setup_config)
partial_charge (Atom attribute)
password (TextInput attribute)
path_too_long (FileErrorCode attribute)
PDB (ExportFormats attribute)
PDBSaveOptions (class in nanome.util.complex_save_options)
percentage (LoadingBar attribute)
permanent_title (Dropdown attribute)
Permissions (class in nanome.util.enums)
placeholder_text (TextInput attribute)
placeholder_text_color (TextInput attribute)
Plugin (class in nanome.api.plugin)
plugin_connection (PacketTypes attribute)
plugin_disconnection (PacketTypes attribute)
plugin_files_path (PluginInstance attribute)
plugin_id (Plugin attribute)
plugin_list (PacketTypes attribute)
PluginInstance (class in nanome.api.plugin_instance)
PluginInstanceRedisInterface (class in nanome.beta.redis_interface)
PluginListButtonType (class in nanome.util.enums)
PluginServer (class in nanome.beta.nanome_sdk.plugin_server)
Point (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
polar_hydrogen (Atom attribute)
poll_nts() (PluginServer method)
poll_session() (PluginServer method)
position (Atom attribute)
(Button.ButtonIcon attribute)
(Complex attribute)
(StreamType attribute)
(Workspace attribute)
(in module nanome.api.shapes.shape_deprecated)
positioning_origin (Button.ButtonTooltip attribute)
positioning_target (Button.ButtonTooltip attribute)
positions (Atom attribute)
PositionSchema (class in nanome.api.schemas.ui_schemas)
PositionStructures (class in nanome.api.structure.messages)
PositionStructuresDone (class in nanome.api.structure.messages)
post_run (Plugin attribute)
pre_run (Plugin attribute)
presenter_change() (in module nanome.api.user.callbacks)
PresenterChange (class in nanome.api.user.messages)
PresenterInfo (class in nanome.api.user.presenter_info)
PresenterInfoSchema (class in nanome.api.schemas.user_schemas)
print_out() (Octree method)
Process (class in nanome.util.process)
Protein (Substructure.SubstructureType attribute)
(SubstructureType attribute)
Put (class in nanome.api.files.messages)
put() (Files method)
PWD (class in nanome.api.files.messages)
pwd() (Files method)
Q
Quaternion (class in nanome.util.quaternion)
QuaternionField (class in nanome.api.schemas.util_schemas)
R
r (Color attribute)
radius (Sphere attribute)
Rainbow (ColorScheme attribute)
random_request_id() (in module nanome.beta.nanome_sdk.utils)
ratio (Button.ButtonIcon attribute)
(LayoutNode.PaddingTypes attribute)
(LayoutNode.SizingTypes attribute)
(PaddingTypes attribute)
(SizingTypes attribute)
read_texture() (MeshSerializer method)
reading (StreamDirection attribute)
receive_complexes() (in module nanome.api.structure.callbacks)
receive_create_stream_result() (in module nanome.api.streams.callbacks)
receive_interrupt_stream() (in module nanome.api.streams.callbacks)
receive_menu() (in module nanome.api.ui.callbacks)
ReceiveComplexes (class in nanome.api.structure.messages)
ReceiveComplexList (class in nanome.api.structure.messages)
ReceiveWorkspace (class in nanome.api.structure.messages)
Red() (nanome.util.color.Color class method)
register_btn_pressed_callback() (UIManager method)
register_changed_callback() (Slider method)
(TextInput method)
register_closed_callback() (Menu method)
register_complex_updated_callback() (Complex method)
register_dropdown_item_clicked_callback() (UIManager method)
register_held_callback() (Image method)
register_hover_callback() (Button method)
register_item_clicked_callback() (Dropdown method)
register_pressed_callback() (Button method)
(Image method)
register_released_callback() (Image method)
(Slider method)
register_selection_changed_callback() (Complex method)
register_slider_change_callback() (UIManager method)
register_slider_released_callback() (UIManager method)
register_submitted_callback() (TextInput method)
register_text_change_callback() (UIManager method)
register_text_submit_callback() (UIManager method)
register_type() (nanome.api.ui.serializers.UIBaseSerializer class method)
registered_classes (UIBaseSerializer attribute)
registered_serializers (UIBaseSerializer attribute)
remarks (Complex attribute)
RemoteLoggingFilter (class in nanome.beta.nanome_sdk.logs)
remove() (Octree method)
remove_atom() (Residue method)
remove_bond() (Residue method)
remove_chain() (Molecule method)
remove_child() (LayoutNode method)
remove_complex() (Workspace method)
remove_content() (LayoutNode method)
remove_from_workspace() (PluginInstance method)
(SessionClient method)
remove_molecule() (Complex method)
remove_residue() (Chain method)
RemoveHydrogenSerializer (class in nanome.api.integration.messages)
request_complex_list() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
request_complexes() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
request_controller_transforms() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
request_directory() (PluginInstance method)
request_export() (PluginInstance method)
(SessionClient method)
request_files() (PluginInstance method)
request_menu_transform() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
request_presenter_info() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
request_workspace() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
RequestComplexes (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
RequestComplexList (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
RequestControllerTransforms (class in nanome.api.schemas.api_definitions)
RequestPresenterInfo (class in nanome.api.schemas.api_definitions)
RequestSubstructure (class in nanome.api.structure.messages)
RequestWorkspace (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
reset_transform() (ComplexUtils static method)
residue (Atom attribute)
(Bond attribute)
Residue (class in nanome.api.structure.residue)
(ColorScheme attribute)
Residue.RibbonMode (class in nanome.api.structure.residue)
Residue.SecondaryStructure (class in nanome.api.structure.residue)
residues (Chain attribute)
(Complex attribute)
(Molecule attribute)
(Substructure attribute)
ResidueSchema (class in nanome.api.schemas.structure_schemas)
ResidueSerializer (class in nanome.api.structure.serializers)
rgb (Color attribute)
rgba (Color attribute)
Ribbon (ColorSchemeTarget attribute)
ribbon_color (Residue attribute)
ribbon_mode (Residue attribute)
ribbon_size (Residue attribute)
ribboned (Residue attribute)
RibbonMode (class in nanome.util.enums)
Right (Button.HorizAlignOptions attribute)
(HorizAlignOptions attribute)
(Label.HorizAlignOptions attribute)
(TextInput.HorizAlignOptions attribute)
right (ToolTipPositioning attribute)
RM (class in nanome.api.files.messages)
rm() (Files method)
RMDir (class in nanome.api.files.messages)
rmdir() (Files method)
Room (class in nanome.api.room.models)
Room.SkyBoxes (class in nanome.api.room.models)
root (Menu attribute)
rotate_vector() (Quaternion method)
rotation (Button.ButtonIcon attribute)
(Complex attribute)
(Workspace attribute)
route_bytes() (PluginServer method)
Run (class in nanome.api.control.messages)
run (PluginListButtonType attribute)
run() (in module nanome.api.control.callbacks)
(Macro method)
(Plugin method)
(PluginServer method)
RunMacro (class in nanome.api.macro.messages)
S
save() (Macro method)
save_files() (PluginInstance method)
(SessionClient method)
SaveMacro (class in nanome.api.macro.messages)
scale (StreamType attribute)
(Workspace attribute)
scaling_option (Image attribute)
ScalingOptions (class in nanome.util.enums)
SDF (ExportFormats attribute)
SDFSaveOptions (class in nanome.util.complex_save_options)
secondary_structure (Residue attribute)
SecondaryStructure (class in nanome.util.enums)
(ColorScheme attribute)
(Residue.RibbonMode attribute)
(RibbonMode attribute)
security_error (FileError attribute)
selected (Atom attribute)
(Button attribute)
(Button.MultiStateVariable attribute)
(DropdownItem attribute)
selected_highlighted (Button.MultiStateVariable attribute)
selection_changed() (in module nanome.api.structure.callbacks)
SelectionChanged (class in nanome.api.structure.messages)
SelectionChangedHook (class in nanome.api.structure.messages)
send_connect() (SessionClient method)
send_files_to_load() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
send_notification() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
send_response() (IntegrationRequest method)
SendNotification (class in nanome.api.schemas.api_definitions)
(class in nanome.api.ui.messages)
serial (Atom attribute)
(Residue attribute)
serialize() (AddBonds method)
(AddDSSP method)
(AddHydrogenSerializer method)
(AddToWorkspace method)
(AddVolume method)
(AddVolumeDone method)
(AdvancedSettings method)
(AnchorSerializer method)
(ApplyColorScheme method)
(AtomSerializer method)
(AtomSerializerID method)
(BondSerializer method)
(ButtonCallback method)
(ButtonSerializer method)
(CD method)
(CP method)
(CalculateESPSerializer method)
(ChainSerializer method)
(ComplexAddedRemoved method)
(ComplexSerializer method)
(ComplexUpdated method)
(ComplexUpdatedHook method)
(ComputeHBonds method)
(Connect method)
(CreateStream method)
(CreateStreamResult method)
(DeleteMacro method)
(DeleteShape method)
(DestroyStream method)
(DirectoryRequest method)
(DropdownCallback method)
(DropdownItemSerializer method)
(DropdownSerializer method)
(ExportFileSerializer method)
(ExportFiles method)
(ExportFilesItem method)
(ExportLocationsSerializer method)
(ExportSmilesSerializer method)
(FeedStream method)
(FeedStreamDone method)
(FileMeta method)
(FileRequest method)
(FileSave method)
(GenerateMoleculeImageSerializer method)
(Get method)
(GetControllerTransforms method)
(GetControllerTransformsResponse method)
(GetMacros method)
(GetMacrosResponse method)
(GetMenuTransform method)
(GetMenuTransformResponse method)
(GetPresenterInfo method)
(GetPresenterInfoResponse method)
(ImageCallback method)
(ImageSerializer method)
(ImportFileSerializer method)
(ImportSmilesSerializer method)
(IntegrationSerializer method)
(InterruptStream method)
(LS method)
(LabelSerializer method)
,
[1]
(LayoutNodeSerializer method)
(LayoutNodeSerializerDeep method)
(LineSerializer method)
(LoadFile method)
(LoadFileDone method)
(LoadFileDoneInfo method)
(LoadFileInfo method)
(LoadingBarSerializer method)
(MKDir method)
(MV method)
(MacroSerializer method)
(MenuCallback method)
(MenuSerializer method)
(MeshSerializer method)
,
[1]
(MoleculeSerializer method)
(OpenURL method)
(PWD method)
(PositionStructures method)
(PositionStructuresDone method)
(PresenterChange method)
(Put method)
(RM method)
(RMDir method)
(ReceiveComplexList method)
(ReceiveComplexes method)
(ReceiveWorkspace method)
(RemoveHydrogenSerializer method)
(RequestComplexList method)
(RequestComplexes method)
(RequestSubstructure method)
(RequestWorkspace method)
(ResidueSerializer method)
(Run method)
(RunMacro method)
(SaveMacro method)
(SelectionChanged method)
(SelectionChangedHook method)
(SendNotification method)
(SetMenuTransform method)
(SetPluginListButton method)
(SetShape method)
(SetSkybox method)
(ShapeSerializer method)
(SliderCallback method)
(SliderSerializer method)
(SphereSerializer method)
(StartMinimizationSerializer method)
(StopMacro method)
(StopMinimizationSerializer method)
(StructurePrepSerializer method)
(SubstructureSerializer method)
(TextInputCallback method)
(TextInputSerializer method)
(UIBaseSerializer method)
(UIHook method)
(UIListSerializer method)
(UnitCellSerializer method)
(UpdateContent method)
(UpdateMenu method)
(UpdateNode method)
(UpdateStructures method)
(UpdateStructuresDeepDone method)
(UpdateWorkspace method)
(VolumeDataSerializer method)
(VolumeLayerSerializer method)
(VolumePropertiesSerializer method)
(WorkspaceSerializer method)
serialize_message() (CommandMessageSerializer method)
SessionClient (class in nanome.beta.nanome_sdk.session.session_client)
SessionLoggingHandler (class in nanome.beta.nanome_sdk.logs)
set() (in module nanome.util.config)
(Quaternion method)
(Vector3 method)
set_all() (Button.MultiStateVariable method)
set_all_selected() (Complex method)
set_client() (NanomePlugin method)
set_color_int() (Color method)
set_color_rgb() (Color method)
set_conformer_count() (Molecule method)
set_content() (LayoutNode method)
set_current_conformer() (Molecule method)
set_current_frame() (Complex method)
set_custom_data() (Plugin method)
set_each() (Button.MultiStateVariable method)
set_maximum_processes_count() (Plugin static method)
set_menu_transform() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
set_on_interrupt_callback() (Stream method)
set_padding() (LayoutNode method)
set_plugin_class() (Plugin method)
set_plugin_identifier() (nanome.api.macro.macro.Macro class method)
set_plugin_list_button() (PluginInstance method)
(SessionClient method)
set_presenter_info() (SessionLoggingHandler method)
set_size_expand() (LayoutNode method)
set_size_fixed() (LayoutNode method)
set_size_ratio() (LayoutNode method)
set_skybox() (Room method)
set_surface_needs_redraw() (Complex method)
set_update_received_callback() (Stream method)
set_visible() (Atom method)
SetMenuTransform (class in nanome.api.ui.messages)
SetPluginListButton (class in nanome.api.control.messages)
SetShape (class in nanome.api.shapes.messages)
SetSkybox (class in nanome.api.room.messages)
setup() (nanome.api.plugin.Plugin class method)
Shape (class in nanome.api.shapes.shape)
shape_color (StreamType attribute)
shape_position (StreamType attribute)
shape_type (Shape attribute)
ShapeAnchorType (class in nanome.util.enums)
shapes_upload_multiple() (SessionClient method)
ShapeSchema (class in nanome.api.schemas.shapes_schema)
ShapeSerializer (class in nanome.api.shapes.serializers)
ShapeType (class in nanome.util.enums)
sharpness (Button.ButtonIcon attribute)
Sheet (Residue.SecondaryStructure attribute)
(SecondaryStructure attribute)
simple_callback_arg() (in module nanome.util.simple_callbacks)
simple_callback_arg_unpack() (in module nanome.util.simple_callbacks)
simple_callback_no_arg() (in module nanome.util.simple_callbacks)
size (Button.ButtonIcon attribute)
(Button.ButtonOutline attribute)
(Button.ButtonText attribute)
(ButtonOutlineSchema attribute)
sizing_type (LayoutNode attribute)
sizing_value (LayoutNode attribute)
SizingTypes (class in nanome.util.enums)
SkyBoxes (class in nanome.util.enums)
Slider (class in nanome.api.ui.slider)
slider_changed() (in module nanome.api.ui.callbacks)
slider_released() (in module nanome.api.ui.callbacks)
SliderCallback (class in nanome.api.ui.messages)
SliderSchema (class in nanome.api.schemas.ui_schemas)
SliderSerializer (class in nanome.api.ui.serializers)
SMILES (ExportFormats attribute)
smiles (Integrations attribute)
SmoothSurface (VolumeVisualStyle attribute)
Solvent (Substructure.SubstructureType attribute)
(SubstructureType attribute)
Sphere (class in nanome.api.shapes.sphere)
(ShapeType attribute)
sphere_shape_radius (StreamType attribute)
SphereSchema (class in nanome.api.schemas.shapes_schema)
SphereSerializer (class in nanome.api.shapes.serializers)
split_tag (Complex attribute)
start() (nanome.beta.nanome_sdk.session.bonding.Bonding class method)
(PluginInstance method)
(Process method)
start_bonding_process() (nanome.beta.nanome_sdk.session.bonding.Bonding class method)
start_session_process() (PluginServer method)
StartMinimizationSerializer (class in nanome.api.integration.messages)
Stick (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
stop() (nanome.api.macro.macro.Macro class method)
(Process method)
StopMacro (class in nanome.api.macro.messages)
StopMinimizationSerializer (class in nanome.api.integration.messages)
Stream (class in nanome.api.streams.stream)
StreamCreationError (class in nanome.util.stream)
StreamDataType (class in nanome.util.enums)
StreamDirection (class in nanome.util.enums)
StreamInterruptReason (class in nanome.util.stream)
StreamNotFound (StreamInterruptReason attribute)
StreamSchema (class in nanome.api.schemas.stream_schemas)
StreamType (class in nanome.util.enums)
StreamUpdate (class in nanome.api.schemas.api_definitions)
stretch (Image.ScalingOptions attribute)
(ScalingOptions attribute)
string (StreamDataType attribute)
StringBuilder (class in nanome.util.string_builder)
structure_prep (Integrations attribute)
structure_schema_map (StructureSchema attribute)
structure_type (Substructure attribute)
StructurePrepSerializer (class in nanome.api.integration.messages)
StructureSchema (class in nanome.api.schemas.structure_schemas)
Substructure (class in nanome.api.structure.substructure)
Substructure.SubstructureType (class in nanome.api.structure.substructure)
SubstructureSerializer (class in nanome.api.structure.serializers)
SubstructureType (class in nanome.util.enums)
success (NotificationTypes attribute)
Sunset (Room.SkyBoxes attribute)
(SkyBoxes attribute)
Surface (ColorSchemeTarget attribute)
surface_color (Atom attribute)
surface_opacity (Atom attribute)
surface_rendering (Atom attribute)
symbol (Atom attribute)
T
target (Anchor attribute)
(in module nanome.api.shapes.shape_deprecated)
text (Label attribute)
text_auto_size (Label attribute)
text_bold (Label attribute)
text_changed() (in module nanome.api.ui.callbacks)
text_color (Label attribute)
(TextInput attribute)
text_horizontal_align (Label attribute)
(TextInput attribute)
text_italic (Label attribute)
text_max_size (Label attribute)
text_min_size (Label attribute)
text_size (Label attribute)
(TextInput attribute)
text_submit() (in module nanome.api.ui.callbacks)
text_underlined (Label attribute)
text_value (Label attribute)
text_vertical_align (Label attribute)
TextInput (class in nanome.api.ui.text_input)
TextInput.HorizAlignOptions (class in nanome.api.ui.text_input)
TextInputCallback (class in nanome.api.ui.messages)
TextInputSchema (class in nanome.api.schemas.ui_schemas)
TextInputSerializer (class in nanome.api.ui.serializers)
texture_path (Mesh attribute)
thickness (Line attribute)
timeout (Process attribute)
TIMEOUT_CODE (Process attribute)
title (Button.ButtonTooltip attribute)
(LoadingBar attribute)
(Macro attribute)
(Menu attribute)
to_ignore (Plugin attribute)
to_json() (LayoutNodeIO method)
(MenuIO method)
to_mmcif() (ComplexIO method)
to_pdb() (ComplexIO method)
to_sdf() (ComplexIO method)
to_string() (StringBuilder method)
toggle_on_press (Button attribute)
ToolTipPositioning (class in nanome.util.enums)
Top (Button.VertAlignOptions attribute)
(Label.VertAlignOptions attribute)
top (ToolTipPositioning attribute)
Top (VertAlignOptions attribute)
top_left (ToolTipPositioning attribute)
top_right (ToolTipPositioning attribute)
total_columns (UIList attribute)
transpose() (Matrix method)
triangles (Mesh attribute)
try_register_session() (CommandMessageSerializer method)
type (Residue attribute)
Type (Stream attribute)
type_name_schemas (ContentSchema attribute)
U
ui_manager (NanomePlugin attribute)
UIBase (class in nanome.api.ui.ui_base)
UIBaseSerializer (class in nanome.api.ui.serializers)
UIBaseSerializer.ContentType (class in nanome.api.ui.serializers)
UIHook (class in nanome.api.ui.messages)
UIHook.Type (class in nanome.api.ui.messages)
UIList (class in nanome.api.ui.ui_list)
UIListSchema (class in nanome.api.schemas.ui_schemas)
UIListSerializer (class in nanome.api.ui.serializers)
UIManager (class in nanome.beta.nanome_sdk.session.ui_manager)
unauthorized_access (FileError attribute)
underlined (Button.ButtonText attribute)
UnitCell (class in nanome.api.volumetric.models)
UnitCellSerializer (class in nanome.api.volumetric.serializers)
Unknown (Bond.Kind attribute)
(Kind attribute)
(Residue.SecondaryStructure attribute)
(Room.SkyBoxes attribute)
(SecondaryStructure attribute)
(SkyBoxes attribute)
Unkown (Substructure.SubstructureType attribute)
(SubstructureType attribute)
unlit (Mesh attribute)
unpack() (Vector3 method)
UnsupportedStream (StreamCreationError attribute)
unusable (Button attribute)
(Button.MultiStateVariable attribute)
(UIList attribute)
update() (PluginInstance method)
(Stream method)
update_content() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
update_json() (MenuIO method)
update_menu() (PluginInstance method)
(SessionClient method)
update_node() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
update_stream() (PluginInstanceRedisInterface method)
update_structures_deep() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
update_structures_shallow() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
update_workspace() (PluginInstance method)
(SessionClient method)
UpdateContent (class in nanome.api.ui.messages)
UpdateMenu (class in nanome.api.ui.messages)
UpdateNode (class in nanome.api.ui.messages)
UpdateStructures (class in nanome.api.structure.messages)
UpdateStructuresDeep (class in nanome.api.schemas.api_definitions)
UpdateStructuresDeepDone (class in nanome.api.structure.messages)
UpdateStructuresShallow (class in nanome.api.schemas.api_definitions)
UpdateWorkspace (class in nanome.api.schemas.api_definitions)
(class in nanome.api.structure.messages)
upload() (Shape method)
upload_multiple() (nanome.api.shapes.shape.Shape class method)
upload_shapes() (PluginInstanceRedisInterface method)
use_permanent_title (Dropdown attribute)
uv (Mesh attribute)
V
value (Button.ButtonIcon attribute)
(Button.ButtonText attribute)
(ButtonIconSchema attribute)
(ButtonTextSchema attribute)
VanDerWaals (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
vdw_radius (Atom attribute)
Vector3 (class in nanome.util.vector3)
Vector3Field (class in nanome.api.schemas.util_schemas)
Vector3Schema (class in nanome.api.schemas.ui_schemas)
version() (AddBonds method)
(AddDSSP method)
(AddHydrogenSerializer method)
(AddToWorkspace method)
(AddVolume method)
(AddVolumeDone method)
(AdvancedSettings method)
(AnchorSerializer method)
(ApplyColorScheme method)
(AtomSerializer method)
(AtomSerializerID method)
(BondSerializer method)
(ButtonCallback method)
(ButtonSerializer method)
(CD method)
(CP method)
(CalculateESPSerializer method)
(ChainSerializer method)
(ComplexAddedRemoved method)
(ComplexSerializer method)
(ComplexUpdated method)
(ComplexUpdatedHook method)
(ComputeHBonds method)
(Connect method)
(CreateStream method)
(CreateStreamResult method)
(DeleteMacro method)
(DeleteShape method)
(DestroyStream method)
(DirectoryRequest method)
(DropdownCallback method)
(DropdownItemSerializer method)
(DropdownSerializer method)
(ExportFileSerializer method)
(ExportFiles method)
(ExportFilesItem method)
(ExportLocationsSerializer method)
(ExportSmilesSerializer method)
(FeedStream method)
(FeedStreamDone method)
(FileMeta method)
(FileRequest method)
(FileSave method)
(GenerateMoleculeImageSerializer method)
(Get method)
(GetControllerTransforms method)
(GetControllerTransformsResponse method)
(GetMacros method)
(GetMacrosResponse method)
(GetMenuTransform method)
(GetMenuTransformResponse method)
(GetPresenterInfo method)
(GetPresenterInfoResponse method)
(ImageCallback method)
(ImageSerializer method)
(ImportFileSerializer method)
(ImportSmilesSerializer method)
(IntegrationSerializer method)
(InterruptStream method)
(LS method)
(LabelSerializer method)
,
[1]
(LayoutNodeSerializer method)
(LayoutNodeSerializerDeep method)
(LineSerializer method)
(LoadFile method)
(LoadFileDone method)
(LoadFileDoneInfo method)
(LoadFileInfo method)
(LoadingBarSerializer method)
(MKDir method)
(MV method)
(MacroSerializer method)
(MenuCallback method)
(MenuSerializer method)
(MeshSerializer method)
,
[1]
(MoleculeSerializer method)
(OpenURL method)
(PWD method)
(PositionStructures method)
(PositionStructuresDone method)
(PresenterChange method)
(Put method)
(RM method)
(RMDir method)
(ReceiveComplexList method)
(ReceiveComplexes method)
(ReceiveWorkspace method)
(RemoveHydrogenSerializer method)
(RequestComplexList method)
(RequestComplexes method)
(RequestSubstructure method)
(RequestWorkspace method)
(ResidueSerializer method)
(Run method)
(RunMacro method)
(SaveMacro method)
(SelectionChanged method)
(SelectionChangedHook method)
(SendNotification method)
(SetMenuTransform method)
(SetPluginListButton method)
(SetShape method)
(SetSkybox method)
(ShapeSerializer method)
(SliderCallback method)
(SliderSerializer method)
(SphereSerializer method)
(StartMinimizationSerializer method)
(StopMacro method)
(StopMinimizationSerializer method)
(StructurePrepSerializer method)
(SubstructureSerializer method)
(TextInputCallback method)
(TextInputSerializer method)
(UIBaseSerializer method)
(UIHook method)
(UIListSerializer method)
(UnitCellSerializer method)
(UpdateContent method)
(UpdateMenu method)
(UpdateNode method)
(UpdateStructures method)
(UpdateStructuresDeepDone method)
(UpdateWorkspace method)
(VolumeDataSerializer method)
(VolumeLayerSerializer method)
(VolumePropertiesSerializer method)
(WorkspaceSerializer method)
VertAlignOptions (class in nanome.util.enums)
vertical (LayoutNode.LayoutTypes attribute)
(LayoutTypes attribute)
vertical_align (Button.ButtonText attribute)
vertices (Mesh attribute)
viewer_offset (Anchor attribute)
visible (Complex attribute)
VolumeData (class in nanome.api.volumetric.models)
VolumeDataSerializer (class in nanome.api.volumetric.serializers)
VolumeLayer (class in nanome.api.volumetric.models)
VolumeLayerSerializer (class in nanome.api.volumetric.serializers)
VolumeProperties (class in nanome.api.volumetric.models)
VolumePropertiesSerializer (class in nanome.api.volumetric.serializers)
VolumeType (class in nanome.util.enums)
VolumeVisualStyle (class in nanome.util.enums)
W
w (Quaternion attribute)
warning (Logs.LogType attribute)
(NotificationTypes attribute)
warning() (nanome.util.logs.Logs class method)
White (Room.SkyBoxes attribute)
(SkyBoxes attribute)
White() (nanome.util.color.Color class method)
width (Menu attribute)
Wire (Atom.AtomRenderingMode attribute)
(AtomRenderingMode attribute)
Workspace (class in nanome.api.structure.workspace)
(ShapeAnchorType attribute)
WorkspaceClient (class in nanome.api.structure.client.workspace_client)
WorkspaceSchema (class in nanome.api.schemas.structure_schemas)
WorkspaceSerializer (class in nanome.api.structure.serializers)
write_text() (FileSaveData method)
writing (StreamDirection attribute)
X
x (Quaternion attribute)
(Vector3 attribute)
Y
y (Quaternion attribute)
(Vector3 attribute)
Yellow() (nanome.util.color.Color class method)
YRBHydrophobicity (ColorScheme attribute)
Z
z (Quaternion attribute)
(Vector3 attribute)
zoom_on_structures() (PluginInstance method)
(PluginInstanceRedisInterface method)
(SessionClient method)
ZoomOnStructures (class in nanome.api.schemas.api_definitions)
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